Structure of PDB 1nkw Chain B

Receptor sequence
>1nkwB (length=205) Species: 1299 (Deinococcus radiodurans) [Search protein sequence]
MKGILGTKIGMTQIWKNDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIG
YAPKAERKVNKPMQGHFAKAGVAPTRILREFRGFAPDGDSVNVDIFAEGE
KIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRV
YKGKRMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGANGGLVVLRS
AAKAS
3D structure
PDB1nkw High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
ChainB
Resolution3.1 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B M11 I21 K61 G65 L78 G110 G115 G130 S140 P147 K152 M11 I21 K61 G65 L78 G110 G115 G130 S140 P147 K152
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1nkw, PDBe:1nkw, PDBj:1nkw
PDBsum1nkw
PubMed11733066
UniProtQ9RXK2|RL3_DEIRA Large ribosomal subunit protein uL3 (Gene Name=rplC)

[Back to BioLiP]