Structure of PDB 1n13 Chain B

Receptor sequence
>1n13B (length=113) Species: 2190 (Methanocaldococcus jannaschii) [Search protein sequence]
cIMPPEAEIVPLPKLPMGALVPTAYGYIISDVPGETISAAISVAIPKDKS
LCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIAVEHTVEK
LGCAFAAAALWYK
3D structure
PDB1n13 Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii: Crystal Structures of the Self-Cleaved and S53A Proenzyme Forms
ChainB
Resolution1.4 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) E109
Catalytic site (residue number reindexed from 1) E56
Enzyme Commision number 4.1.1.19: arginine decarboxylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AG2 B X53 I107 E109 X1 I55 E57
Gene Ontology
Molecular Function
GO:0008792 arginine decarboxylase activity
GO:0016831 carboxy-lyase activity
Biological Process
GO:0006520 amino acid metabolic process
GO:0006527 arginine catabolic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1n13, PDBe:1n13, PDBj:1n13
PDBsum1n13
PubMed12623016
UniProtQ57764|PDAD_METJA Pyruvoyl-dependent arginine decarboxylase (Gene Name=pdaD)

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