Structure of PDB 1lvm Chain B

Receptor sequence
>1lvmB (length=219) Species: 12227 (Tobacco etch virus) [Search protein sequence]
SLFKGPRDYNPISSTICHLTNESDGHTTSLYGIGFGPFIITNKHLFRRNN
GTLLVQSLHGVFKVKNTTTLQQHLIDGRDMIIIRMPKDFPPFPQKLKFRE
PQREERICLVTTNFQTKSMSSMVSDTSCTFPSSDGIFWKHWIQTKDGQCG
SPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTNQEAQQWVSGW
RLNADSVLWGGHKVFMDKP
3D structure
PDB1lvm Structural basis for the substrate specificity of tobacco etch virus protease.
ChainB
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.-.-
3.4.22.44: nuclear-inclusion-a endopeptidase.
3.4.22.45: helper-component proteinase.
3.6.4.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B H46 D81 T146 K147 D148 C151 H167 S168 A169 S170 N171 F172 N176 Y178 W211 H214 K215 V216 F217 M218 D219 K220 P221 H44 D79 T144 K145 D146 C149 H165 S166 A167 S168 N169 F170 N174 Y176 W209 H212 K213 V214 F215 M216 D217 K218 P219
Gene Ontology
Molecular Function
GO:0008234 cysteine-type peptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1lvm, PDBe:1lvm, PDBj:1lvm
PDBsum1lvm
PubMed12377789
UniProtP04517|POLG_TEV Genome polyprotein

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