Structure of PDB 1iak Chain B

Receptor sequence
>1iakB (length=185) Species: 10090 (Mus musculus) [Search protein sequence]
GSFVHQFQPFCYFTNGTQRIRLVIRYIYNREEYVRFDSDVGEYRAVTELG
RPDAEYWNKQYLERTRAELDTVCRHNYEKTETPTSLRRLEQPSVVISLSR
TEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTF
QVLVMLEMTPRRGEVYTCHVEHPSLTSPITVEWRA
3D structure
PDB1iak Crystal structure of I-Ak in complex with a dominant epitope of lysozyme.
ChainB
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B H9 F11 P13 Y30 Y47 D57 Y60 W61 Y67 E74 V78 H81 N82 K84A T85 H5 F7 P9 Y26 Y43 D53 Y56 W57 Y61 E68 V72 H75 N76 K79 T80
Gene Ontology
Biological Process
GO:0006955 immune response
GO:0019882 antigen processing and presentation
Cellular Component
GO:0016020 membrane
GO:0042613 MHC class II protein complex

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Biological Process
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Cellular Component
External links
PDB RCSB:1iak, PDBe:1iak, PDBj:1iak
PDBsum1iak
PubMed9529148
UniProtP06343|HB2K_MOUSE H-2 class II histocompatibility antigen, A-K beta chain (Gene Name=H2-Ab1)

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