Structure of PDB 1f8v Chain B

Receptor sequence
>1f8vB (length=313) Species: 103782 (Pariacoto virus) [Search protein sequence]
NPRLTDAGLAFLKCAFAAPDFSVDPGKGIPDNFHGRTLAIKDCNTTSVVF
TPNTDTYIVVAPVPGFAYFRAEVAVGAQPTTFVGVPYPTYATNFGAGSQN
GLPAVNNYSKFRYASMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAV
TAITPAPGVFANFVDKRINGLRGIRPLAPRDNYSGNFIDGAYTFAFDKST
DFEWCDFVRSLEFSESNVLGAATAMKLLAPGGGTDTTLTGLGNVNTLVYK
ISTPTGAVNTAILRTWNCIELQPYTDSALFQFSGVSPPFDPLALECYHNL
KMRFPVAVSSREN
3D structure
PDB1f8v The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA.
ChainB
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B N49 K61 A65 D68 F242 E343 C344 N347 L348 F352 N361 N1 K13 A17 D20 F194 E295 C296 N299 L300 F304 N313
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1f8v, PDBe:1f8v, PDBj:1f8v
PDBsum1f8v
PubMed11135676
UniProtQ9J7Z0|CAPSD_PAV Capsid protein alpha (Gene Name=alpha)

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