Structure of PDB 1dvr Chain B

Receptor sequence
>1dvrB (length=220) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
SSESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLG
LEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEK
LDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPK
EDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGV
DASQPPATVWADILNKLGKN
3D structure
PDB1dvr Structure of a mutant adenylate kinase ligated with an ATP-analogue showing domain closure over ATP.
ChainB
Resolution2.36 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) K17 R93 R132 I165 R176
Catalytic site (residue number reindexed from 1) K17 R93 R132 I165 R176
Enzyme Commision number 2.7.4.3: adenylate kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATF B K55 Q59 K55 Q59
BS02 ATF B P13 G14 G16 K17 G18 T19 R128 R132 S141 Y142 H143 F146 Q204 P206 P13 G14 G16 K17 G18 T19 R128 R132 S141 Y142 H143 F146 Q204 P206
Gene Ontology
Molecular Function
GO:0003688 DNA replication origin binding
GO:0004017 adenylate kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016776 phosphotransferase activity, phosphate group as acceptor
GO:0019205 nucleobase-containing compound kinase activity
Biological Process
GO:0006139 nucleobase-containing compound metabolic process
GO:0006172 ADP biosynthetic process
GO:0006270 DNA replication initiation
GO:0009117 nucleotide metabolic process
GO:0016310 phosphorylation
GO:0036388 pre-replicative complex assembly
GO:0046033 AMP metabolic process
GO:0046034 ATP metabolic process
GO:0046940 nucleoside monophosphate phosphorylation
Cellular Component
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005758 mitochondrial intermembrane space
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1dvr, PDBe:1dvr, PDBj:1dvr
PDBsum1dvr
PubMed8594191
UniProtP07170|KAD2_YEAST Adenylate kinase (Gene Name=ADK1)

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