Structure of PDB 1dap Chain B

Receptor sequence
>1dapB (length=320) Species: 1718 (Corynebacterium glutamicum) [Search protein sequence]
MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVA
DVDKHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQ
VMNEAATAAGNVALVSTGWDPGMFSINRVYAAAVLAEHQQHTFWGPGLSQ
GHSDALRRIPGVQKAVQYTLPSEDALEKARRGEAGDLTGKQTHKRQCFVV
ADAADHERIENDIRTMPDYFVGYEVEVNFIDEATFDSEHTGMPHGGHVIT
TGDTGGFNHTVEYILKLDRNPDFTASSQIAFGRAAHRMKQQGQSGAFTVL
EVAPYLLSPENLDDLIARDV
3D structure
PDB1dap Three-dimensional structure of meso-diaminopimelic acid dehydrogenase from Corynebacterium glutamicum.
ChainB
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.4.1.16: diaminopimelate dehydrogenase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ACT B W144 T169 R195 H244 W144 T169 R195 H244
BS02 NDP B G10 Y11 G12 N13 L14 S35 R36 R37 S68 T88 D90 T117 G118 W119 D120 P121 Q150 G151 T274 G10 Y11 G12 N13 L14 S35 R36 R37 S68 T88 D90 T117 G118 W119 D120 P121 Q150 G151 T274
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0047850 diaminopimelate dehydrogenase activity
Biological Process
GO:0009085 lysine biosynthetic process
GO:0009089 lysine biosynthetic process via diaminopimelate
GO:0019877 diaminopimelate biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:1dap, PDBe:1dap, PDBj:1dap
PDBsum1dap
PubMed8885833
UniProtP04964|DAPDH_CORGL Meso-diaminopimelate D-dehydrogenase (Gene Name=ddh)

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