Structure of PDB 1bai Chain B

Receptor sequence
>1baiB (length=124) Species: 11886 (Rous sarcoma virus) [Search protein sequence]
LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDTGADDTVISEEDW
PTDWPVMEAANPQIHGIGGGIPVRKSRDMIELGVINRDGSLERPLLLFPL
VAMTPVNILGRDCLQGLGLRLTNL
3D structure
PDB1bai Structural basis for specificity of retroviral proteases.
ChainB
Resolution2.4 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D37 T38 G39
Catalytic site (residue number reindexed from 1) D37 T38 G39
Enzyme Commision number 3.4.23.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 0Q4 B L35 A40 Q63 V106 L35 A40 Q63 V106 PDBbind-CN: -logKd/Ki=7.70,Ki=20nM
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1bai, PDBe:1bai, PDBj:1bai
PDBsum1bai
PubMed9521772
UniProtP03322|GAG_RSVP Gag polyprotein (Gene Name=gag)

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