Structure of PDB 7o81 Chain Ar

Receptor sequence

>7o81Ar (length=148) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADID
LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLAN
GLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVS

3D structure

PDB

7o81 Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome.

Chain

Resolution

3.1 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ar	R24 K25 F28 G35 V36 G37 R38 R39 Y40 R55 W82 F83 N85 R86 Q87 K88 L103 L107 D110 H120 R121 H125 R130 V131 R132 G133 Q134 H135 T136 K137 T138 T139 G140 R141 R142 R144 T145 G147 S149	R23 K24 F27 G34 V35 G36 R37 R38 Y39 R54 W81 F82 N84 R85 Q86 K87 L102 L106 D109 H119 R120 H124 R129 V130 R131 G132 Q133 H134 T135 K136 T137 T138 G139 R140 R141 R143 T144 G146 S148

Gene Ontology

	Molecular Function
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022626	cytosolic ribosome
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:7o81, PDBe:7o81, PDBj:7o81
PDBsum	7o81
PubMed	34029205
UniProt	G1TPG3\|RS18_RABIT Small ribosomal subunit protein uS13 (Gene Name=RPS18)

[Back to BioLiP]