Structure of PDB 9f1d Chain Ap

Receptor sequence

>9f1dAp (length=141) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPV
LLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASK
KEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ap	Q11 V12 F13 R15 K17 T18 V22 K33 R37 E43 P44 R69 R71 K73 G74 G75 G76 H77 V78 A79 Q80 R117 R125 R126 C127 E128 S129 K130 K131 F132 G133 G136 R138 A139 R140 Y141 Q142 K143 S144 Y145	Q6 V7 F8 R10 K12 T13 V17 K28 R32 E38 P39 R64 R66 K68 G69 G70 G71 H72 V73 A74 Q75 R112 R120 R121 C122 E123 S124 K125 K126 F127 G128 G131 R133 A134 R135 Y136 Q137 K138 S139 Y140

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1SGX4\|RS16_RABIT Small ribosomal subunit protein uS9 (Gene Name=RPS16)