Structure of PDB 5aj0 Chain Ao

Receptor sequence

>5aj0Ao (length=105) Species: 9606 (Homo sapiens) [Search protein sequence]

VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQ
TKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG
QVIQF

3D structure

PDB

5aj0 Structural Snapshots of Actively Translating Human Ribosomes

Chain

Resolution

3.5 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	Ao	V2 N3 P5 R8 R9 F11 K13 H18 Y26 K28 G29 S32 Y34 Q36 G37 R39 R40 R43 K44 G47 Y48 G49 G50 Q51 P54 I55 F56 R57 K59 A60 K61 T63 K65 K80 R81 K86 R87 C88 K89 K97 K98 K100	V1 N2 P4 R7 R8 F10 K12 H17 Y25 K27 G28 S31 Y33 Q35 G36 R38 R39 R42 K43 G46 Y47 G48 G49 Q50 P53 I54 F55 R56 K58 A59 K60 T62 K64 K79 R80 K85 R86 C87 K88 K96 K97 K99
BS02	rna	Ao	I104 F106	I103 F105
BS03	rna	Ao	Y41 K53 P54 I55	Y40 K52 P53 I54

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0005886	plasma membrane
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:5aj0, PDBe:5aj0, PDBj:5aj0
PDBsum	5aj0
PubMed	25957688
UniProt	P83881\|RL36A_HUMAN Large ribosomal subunit protein eL42 (Gene Name=RPL36A)