Structure of PDB 4ujd Chain Al

Receptor sequence

>4ujdAl (length=50) Species: 9986 (Oryctolagus cuniculus)

SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL

3D structure

• PDB: 4ujd Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires
• Chain: Al
• Resolution: 8.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Al	S2 S3 H4 K5 L13 Q17 P22 K34 I35 R41 H43 W44 R45 K48	S1 S2 H3 K4 L12 Q16 P21 K33 I34 R40 H42 W43 R44 K47
BS02	rna	Al	T6 F7 R8 F12 K15 K18 Q19 R21 I23 W26 M29 K30 T31	T5 F6 R7 F11 K14 K17 Q18 R20 I22 W25 M28 K29 T30

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Mar 7 08:56:01 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4ujd', asym_id = 'Al', title = 'Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4ujd', asym_id='Al', title='Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4ujd', asym_id = 'Al'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4ujd', asym_id='Al')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>