Structure of PDB 9f1d Chain Ak

Receptor sequence

>9f1dAk (length=154) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

DIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIE
GTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRF
EKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK
KQFQ

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ak	E7 R8 Q11 T15 F17 Y36 N39 I40 G41 L42 K48 K58 K59 N65 S67 I68 R69 R71 K79 K81 M82 Q83 R89 Y92 H94 R97 K98 Y99 K104 R105 H106 K107 N108 E130 R132 P133 L134 S135 K136 T137 R139 F140 K153 Q156	E5 R6 Q9 T13 F15 Y34 N37 I38 G39 L40 K46 K56 K57 N63 S65 I66 R67 R69 K77 K79 M80 Q81 R87 Y90 H92 R95 K96 Y97 K102 R103 H104 K105 N106 E128 R130 P131 L132 S133 K134 T135 R137 F138 K151 Q154

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1TRM4\|RS11_RABIT Small ribosomal subunit protein uS17 (Gene Name=RPS11)

[Back to BioLiP]