Structure of PDB 9f1d Chain Ai

Receptor sequence

>9f1dAi (length=185) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

PVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLA
KIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLK
IEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRL
DSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAG

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ai	P2 V3 R5 W7 V8 C9 R10 K11 T12 Y13 T15 R17 R18 P19 F20 R38 N39 K40 R41 R45 A51 F72 A76 R79 R80 S122 H125 R127 R131 Q132 R133 H134 Q140 N143 I144 S146 F147 I148 R150 S153 R162 Y165 R169 G171 R172 V173 K174	P1 V2 R4 W6 V7 C8 R9 K10 T11 Y12 T14 R16 R17 P18 F19 R37 N38 K39 R40 R44 A50 F71 A75 R78 R79 S121 H124 R126 R130 Q131 R132 H133 Q139 N142 I143 S145 F146 I147 R149 S152 R161 Y164 R168 G170 R171 V172 K173

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	B7NZS8\|RS9_RABIT Small ribosomal subunit protein uS4 (Gene Name=RPS9)

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