Structure of PDB 9f1c Chain Ah

Receptor sequence

>9f1cAh (length=206) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG
NKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCI
VLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDE
RKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRK
IKARKG

3D structure

PDB

9f1c NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.78 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ah	R77 R92 K124 K170 R205	R76 R91 K123 K169 R204
BS02	rna	Ah	G2 I3 R5 N7 H9 K10 R11 R12 T14 Y21 K23 K24 R25 K26 Y27 L29 R31 I43 H44 T45 R47 V48 R49 G50 K54 Y55 R56 L58 R59 N64 S66 T73 R74 S86 N87 K98 N99 K143 K147 K148 Y149 A176 R178 G180 Q181 R184	G1 I2 R4 N6 H8 K9 R10 R11 T13 Y20 K22 K23 R24 K25 Y26 L28 R30 I42 H43 T44 R46 V47 R48 G49 K53 Y54 R55 L57 R58 N63 S65 T72 R73 S85 N86 K97 N98 K142 K146 K147 Y148 A175 R177 G179 Q180 R183

External links

PDB	RCSB:9f1c, PDBe:9f1c, PDBj:9f1c
PDBsum	9f1c
PubMed	39169182
UniProt	G1TJW1\|RS8_RABIT Small ribosomal subunit protein eS8 (Gene Name=RPS8)

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