Structure of PDB 8oip Chain Ag

Receptor sequence
>8oipAg (length=328) Species: 9823 (Sus scrofa) [Search protein sequence]
TVDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEK
RARPIMKHPEEIFPKQRAIQWGEDGRPFHFLFYTGKQSYYSLMHDTYGKL
LDVEKHHNQLRAKDLLAEKTKILKDPIGSRWLIKEELEEMLVEKLSDQDY
AQFIRLLERLSALPCGATEEDFVNRFRRSIPIQSKKQLIEPLQYDEQGMA
FSRGEGKRKTAKAEVVVYGQGSGRIDVNGVDYLLYFPVTQDREQLMFPLH
FLDRLGKHDMTCAVSGGGRSAQAGAVRLAMARALCSFVTEDEVEWMRQAG
LLTADPRVRERKKPGQEGARRKFTWKKR
3D structure
PDB8oip Molecular basis of translation termination at noncanonical stop codons in human mitochondria.
ChainAg
Resolution3.6 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Ag F117 E118 Q217 R277 K278 G337 R338 S339 R376 R378 R380 K381 K382 P383 G384 A388 R389 R390 T393 W394 K395 K396 R397 F48 E49 Q148 R208 K209 G268 R269 S270 R307 R309 R311 K312 K313 P314 G315 A319 R320 R321 T324 W325 K326 K327 R328
BS02 rna Ag K396 R397 K327 R328
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005730 nucleolus
GO:0005739 mitochondrion
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8oip, PDBe:8oip, PDBj:8oip
PDBsum8oip
PubMed37141370
UniProtI3LU08

[Back to BioLiP]