Structure of PDB 6skf Chain Ag

Receptor sequence
>6skfAg (length=223) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence]
EIAQRVLEEWEPKTKLGRLVKEGQITDIHEIFRKGYQIKEPEIVDVLLPE
VNLRENQEVLDIALTVRMTDSGRRIRFRVLAAVGNRDGYVGLGIGHGREV
GIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKL
MPGPRGLGLVIGDVGKKILTLAGVQDVWSQTLGETRTTVNFAKAVFNALY
NTNRVAIKPEDIERYGIVVGRAM
3D structure
PDB6skf Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping.
ChainAg
Resolution2.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Ag K44 T70 V71 R72 M73 D75 S76 R78 R81 R83 H101 R103 K111 K147 E148 S150 R152 V165 W183 E189 T190 R191 N195 K198 K39 T65 V66 R67 M68 D70 S71 R73 R76 R78 H96 R98 K106 K142 E143 S145 R147 V160 W178 E184 T185 R186 N190 K193
BS02 ZN Ag C127 C132 H138 C122 C127 H133
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6skf, PDBe:6skf, PDBj:6skf
PDBsum6skf
PubMed32555463
UniProtQ5JJG8|RS5_THEKO Small ribosomal subunit protein uS5 (Gene Name=rps5)

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