Structure of PDB 5aj4 Chain Ag

Receptor sequence
>5aj4Ag (length=346) Species: 9823 (Sus scrofa) [Search protein sequence]
PPPPPPPPPPPPPPPPPPSLQELKTVFPHGLPPRFAMQVKTFNEACLMVR
KPALELLHYLKNTNFAHPAVRYVLYGEKGTGKTLSLCHILHFCAKQNWLI
LHIPDAHIWVKNCRDLLQSNYNKQRFDQPLEASTWLKNFKTANEHFLSQI
KVQEKYVWNKRESTEKGRPLGEVVEQGIMRVRNATDAVGIVLKELKRQSS
LGIFHLLVAVDGVNALWGRTTLKREDKSPIAPEELALIHNLRKMVKNDWQ
GGAIVLTVSQTGSLFKPRNAYLPQELLGKEGFDALDPFIPILVSNYNPKE
FESCIQYYLENNWLQHEKAHTEEGKKELLFLSNRNPGQLERLCAYL
3D structure
PDB5aj4 The complete structure of the 55S mammalian mitochondrial ribosome.
ChainAg
Resolution3.8 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Ag K129 G130 N163 R165 L315 F316 R319 G388 R392 K78 G79 N112 R114 L264 F265 R268 G337 R341
BS02 GDP Ag R85 M99 K129 G130 G132 T134 L135 Y347 R34 M48 K78 G79 G81 T83 L84 Y296
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Mar 13 16:12:41 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5aj4', asym_id = 'Ag', title = 'The complete structure of the 55S mammalian mitochondrial ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5aj4', asym_id='Ag', title='The complete structure of the 55S mammalian mitochondrial ribosome.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0005761,0006915,0015935', uniprot = '', pdbid = '5aj4', asym_id = 'Ag'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005761,0006915,0015935', uniprot='', pdbid='5aj4', asym_id='Ag')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>