Structure of PDB 9f1d Chain Af

Receptor sequence

>9f1dAf (length=237) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVV
RISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGC
IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKE
DDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTK
KNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSL

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Af	N4 S6 P8 Q13 L15 R31 S53 N56 K58 Q59 G60 Q65 G66 R72 R74 L76 C83 Y84 R87 R88 T89 G90 R92 R94 K95 S96 V108 V112 R131 R132 L133 G134 P135 K136 R137 S139 R140 K149 R154 R159 K160 L162 N163 K164 K168 R170 T171 K172 A173 P174 K175 I176 Q177 R178 V180 R183 V184 Q186 H187 K188 R189 R190 R191 K195 K196 R198 T199 K201 R231	N4 S6 P8 Q13 L15 R31 S53 N56 K58 Q59 G60 Q65 G66 R72 R74 L76 C83 Y84 R87 R88 T89 G90 R92 R94 K95 S96 V108 V112 R131 R132 L133 G134 P135 K136 R137 S139 R140 K149 R154 R159 K160 L162 N163 K164 K168 R170 T171 K172 A173 P174 K175 I176 Q177 R178 V180 R183 V184 Q186 H187 K188 R189 R190 R191 K195 K196 R198 T199 K201 R231

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1TM55\|RS6_RABIT Small ribosomal subunit protein eS6 (Gene Name=RPS6)

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