Structure of PDB 8q87 Chain Af

Receptor sequence

>8q87Af (length=227) Species: 9031 (Gallus gallus) [Search protein sequence]

MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVV
RISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGC
IVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKE
DDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQ
KNKEEAADYAKLLAKRMKEAKEKRQEQ

3D structure

PDB

8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells

Chain

Resolution

2.4 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Af	K2 N4 S6 P8 Q13 L15 S53 K58 Q59 G60 F61 Q65 G66 R72 L75 L76 H81 C83 Y84 R85 R87 R88 G90 R92 K93 R94 K95 S96 S107 N110 R131 R132 L133 G134 K136 R137 S139 R140 K149 R154 R159 K160 L162 K164 K167 P169 R170 T171 K172 A173 P174 K175 I176 Q177 R178 L179 V180 R183 V184 L185 Q186 H187 K188 R189 R190 R191 I192 K195 K196 R198 K201 N202	K2 N4 S6 P8 Q13 L15 S53 K58 Q59 G60 F61 Q65 G66 R72 L75 L76 H81 C83 Y84 R85 R87 R88 G90 R92 K93 R94 K95 S96 S107 N110 R131 R132 L133 G134 K136 R137 S139 R140 K149 R154 R159 K160 L162 K164 K167 P169 R170 T171 K172 A173 P174 K175 I176 Q177 R178 L179 V180 R183 V184 L185 Q186 H187 K188 R189 R190 R191 I192 K195 K196 R198 K201 N202

External links

PDB	RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum	8q87
PubMed
UniProt	P47838\|RS6_CHICK Small ribosomal subunit protein eS6 (Gene Name=RPS6)

[Back to BioLiP]