Structure of PDB 9f1d Chain Ad

Receptor sequence

>9f1dAd (length=262) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNR
LKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRL
IYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPD
PLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERH
PGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE
RDKRLAAKQSSG

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ad	R3 G4 K6 K7 H8 K10 V12 M19 D21 K22 T24 G25 V26 F27 P29 R30 T33 G34 K37 R49 T57 G58 K62 M66 K75 R77 K106 R108 K128 V131 G132 K134 V140 A144 T146 R148 K155 A187 N188 N197 H201 P202 G203 A219 R221 R240	R2 G3 K5 K6 H7 K9 V11 M18 D20 K21 T23 G24 V25 F26 P28 R29 T32 G33 K36 R48 T56 G57 K61 M65 K74 R76 K105 R107 K127 V130 G131 K133 V139 A143 T145 R147 K154 A186 N187 N196 H200 P201 G202 A218 R220 R239

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1TK17\|RS4X_RABIT Small ribosomal subunit protein eS4 (Gene Name=RPS4X)

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