Structure of PDB 8q87 Chain Ad

Receptor sequence

>8q87Ad (length=262) Species: 9031 (Gallus gallus) [Search protein sequence]

ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNR
LKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRL
VYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPD
PLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERH
PGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE
RDKRLAAKQSSG

3D structure

PDB

8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells

Chain

Resolution

2.4 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ad	A2 R3 G4 P5 K6 K7 H8 K10 R11 V12 K16 M19 D21 K22 F27 A28 P29 R30 T33 G34 K37 L38 R49 T57 G58 K62 M66 K75 R77 K106 R108 K128 V131 G132 T133 K134 G135 V140 A144 T146 R148 K155 G186 A187 R200 H201 P202 G203 R240 I248	A1 R2 G3 P4 K5 K6 H7 K9 R10 V11 K15 M18 D20 K21 F26 A27 P28 R29 T32 G33 K36 L37 R48 T56 G57 K61 M65 K74 R76 K105 R107 K127 V130 G131 T132 K133 G134 V139 A143 T145 R147 K154 G185 A186 R199 H200 P201 G202 R239 I247

External links

PDB	RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum	8q87
PubMed
UniProt	P47836\|RS4_CHICK Small ribosomal subunit protein eS4 (Gene Name=RPS4)

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