Structure of PDB 4ujd Chain Ac

Receptor sequence

>4ujdAc (length=103) Species: 9986 (Oryctolagus cuniculus)

TKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR
KSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR
SMP

3D structure

• PDB: 4ujd Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires
• Chain: Ac
• Resolution: 8.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ac	G30 Y31 K32 Q33 N51 C52 P53 A54 R56 K57 S58 E61 Y88 Y89 R90	G24 Y25 K26 Q27 N45 C46 P47 A48 R50 K51 S52 E55 Y82 Y83 R84

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Mar 7 09:05:31 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4ujd', asym_id = 'Ac', title = 'Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4ujd', asym_id='Ac', title='Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003723,0003735,0022625', uniprot = '', pdbid = '4ujd', asym_id = 'Ac'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0022625', uniprot='', pdbid='4ujd', asym_id='Ac')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>