Structure of PDB 9f1d Chain Ab

Receptor sequence

>9f1dAb (length=220) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

DKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGAALKDEV
LKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAII
LAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVS
APVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLW
KETVFTKSPYQEFTDHLVKT

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Ab	Q113 K114 Q115 T116 R117 A118 R123 K125 T185 R187 C188 G189 S190 L192 R194 S206 A207 Y223 T224 R227 C229 T230 T232 N235 K238 Y250	Q57 K58 Q59 T60 R61 A62 R67 K69 T129 R131 C132 G133 S134 L136 R138 S150 A151 Y167 T168 R171 C173 T174 T176 N179 K182 Y194

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182

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