Structure of PDB 9f1d Chain Aa

Receptor sequence

>9f1dAa (length=224) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

AVGKNKRLTKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIAS
DGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDK
MCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ
QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD
VFVRKVKMLKKPKFELGKLMELHG

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Aa	A2 K5 N6 K7 T10 P24 K56 K115 K116 W117 Q118 H124 R136 F138 R146 N148 Q149 I150 R151 Y155 Q157 H158 Q159 Q160 R162 R165 Q202 S203 I204 Y205 P206 K214 K216	A1 K4 N5 K6 T9 P15 K47 K106 K107 W108 Q109 H115 R127 F129 R137 N139 Q140 I141 R142 Y146 Q148 H149 Q150 Q151 R153 R156 Q193 S194 I195 Y196 P197 K205 K207

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1SS70\|RS3A_RABIT Small ribosomal subunit protein eS1 (Gene Name=RPS3A)

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