Structure of PDB 6ola Chain AY

Receptor sequence
>6olaAY (length=196) Species: 85708 (Porcine circovirus 2) [Search protein sequence]
YRWRRKNGIFNTRLSRTIGYTVKKTTVRTPSWNVDMMRFNINDFLPPGGG
SNPLTVPFEYYRIRKVKVEFWPCSPITQGDRGVGSTAVILDDNFVTKANA
LTYDPYVNYSSRHTITQPFSYHSRYFTPKPVLDRTIDYFQPNNKRNQLWL
RLQTTGNVDHVGLGTAFENSIYDQDYNIRITMYVQFREFNLKDPPL
3D structure
PDB6ola Structural characterization of the PCV2d virus-like particle at 3.3 angstrom resolution reveals differences to PCV2a and PCV2b capsids, a tetranucleotide, and an N-terminus near the icosahedral 3-fold axes.
ChainAY
Resolution3.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 dna AY R48 K102 W106 Y156 Y160 Y218 R13 K67 W71 Y121 Y125 Y183
Gene Ontology
Biological Process
GO:0019069 viral capsid assembly

View graph for
Biological Process
External links
PDB RCSB:6ola, PDBe:6ola, PDBj:6ola
PDBsum6ola
PubMed31505320
UniProtG0ZPI6

[Back to BioLiP]