Structure of PDB 6vmi Chain AX

Receptor sequence
>6vmiAX (length=353) Species: 9606 (Homo sapiens) [Search protein sequence]
RAISRTNENDPAKHGDQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFS
EACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKTLSLCHVIHFC
AKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTN
ERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLK
ELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRK
MMKNDWHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILV
SNYNPKEFESCIQYYLENNWLQHEKAPTEEGKKELLFLSNANPSLLERHC
AYL
3D structure
PDB6vmi Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation.
ChainAX
Resolution2.96 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna AX P85 K130 G131 K163 N164 T273 K279 T313 L316 F317 K318 P319 R320 S389 L390 R393 P40 K85 G86 K118 N119 T228 K234 T268 L271 F272 K273 P274 R275 S344 L345 R348
BS02 GDP AX F87 K134 T135 L136 Y348 P388 S389 E392 F42 K89 T90 L91 Y303 P343 S344 E347
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0005525 GTP binding
Biological Process
GO:0006915 apoptotic process
GO:0032543 mitochondrial translation
GO:0097190 apoptotic signaling pathway
Cellular Component
GO:0005654 nucleoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005761 mitochondrial ribosome
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:6vmi, PDBe:6vmi, PDBj:6vmi
PDBsum6vmi
PubMed32737313
UniProtP51398|RT29_HUMAN Small ribosomal subunit protein mS29 (Gene Name=DAP3)

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