Structure of PDB 4v6k Chain AX

Receptor sequence

>4v6kAX (length=84) Species: 83333 (Escherichia coli K-12) [Search protein sequence]

AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANV
GCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE

3D structure

PDB

4v6k Structural insights into cognate versus near-cognate discrimination during decoding.

Chain

Resolution

8.25 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AX	K71 G72 N75	K71 G72 N75
BS02	rna	AX	H2 K3 S8 T9 R10 N11 G12 R13 E16 K18 R19 L20 G21 V22 K23 R24 E28 S29 R38 Q39 R40 G41 K43 V50 G53 R54 D55 H56 F59 K61 F68 R76	H2 K3 S8 T9 R10 N11 G12 R13 E16 K18 R19 L20 G21 V22 K23 R24 E28 S29 R38 Q39 R40 G41 K43 V50 G53 R54 D55 H56 F59 K61 F68 R76

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding
GO:0043022	ribosome binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0001558	regulation of cell growth
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0042256	cytosolic ribosome assembly
GO:0090070	positive regulation of ribosome biogenesis
GO:1902626	assembly of large subunit precursor of preribosome

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v6k, PDBe:4v6k, PDBj:4v6k
PDBsum	4v6k
PubMed	21378755
UniProt	P0A7L8\|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)