Structure of PDB 8wq4 Chain AS5P

Receptor sequence
>8wq4AS5P (length=204) Species: 330779 (Sulfolobus acidocaldarius DSM 639) [Search protein sequence]
EDWKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLPKLRYDIVD
IGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDA
KMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVV
GSVLKTFLSLAGLKDVWSRTKGSTYTHENFIKAAYIALYNTYRFVTPVDW
GRMK
3D structure
PDB8wq4 Structural basis of translation inhibition by a valine tRNA-derived fragment
ChainAS5P
Resolution4.53 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna AS5P Q70 K71 Q72 T73 D74 T98 S149 T161 V165 G166 S167 W182 K186 T189 Y190 N194 K197 Q55 K56 Q57 T58 D59 T83 S134 T146 V150 G151 S152 W167 K171 T174 Y175 N179 K182
BS02 UNK AS5P F40 E41 K219 F25 E26 K204
BS03 UNK AS5P F40 L44 P45 F25 L29 P30
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8wq4, PDBe:8wq4, PDBj:8wq4
PDBsum8wq4
PubMed38599770
UniProtO05641|RS5_SULAC Small ribosomal subunit protein uS5 (Gene Name=rps5)

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