Structure of PDB 9bdn Chain AS01

Receptor sequence

>9bdnAS01 (length=213) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS
LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTM
IEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMME
IMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKK
PKFELGKLMELHG

3D structure

PDB

9bdn Structural mechanism of angiogenin activation by the ribosome.

Chain

AS01

Resolution

3.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AS01	K28 H101 S112 V114 K115 K116 W117 M120 H124 R136 F138 R146 N148 Q149 I150 R151 Y155 Q157 H158 Q159 R162 R165 Q202 S203 Y205 P206 K214 K216	K8 H81 S92 V94 K95 K96 W97 M100 H104 R116 F118 R126 N128 Q129 I130 R131 Y135 Q137 H138 Q139 R142 R145 Q182 S183 Y185 P186 K194 K196

External links

PDB	RCSB:9bdn, PDBe:9bdn, PDBj:9bdn
PDBsum	9bdn
PubMed	38718836
UniProt	G1SS70\|RS3A_RABIT Small ribosomal subunit protein eS1 (Gene Name=RPS3A)

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