Structure of PDB 8ova Chain AS

Receptor sequence

>8ovaAS (length=140) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence]

TKTNGQHAARKLVRLRRKNRWADKGWKKSHTFVAQKANPFGGSSHAKGIV
LEKIGVGAKQPNSAIRKCVRVQLIKNDKKIIAFVPNDGCLHFIEENDEVL
VSGFGRSGHAVGDIPGVRFKIVKVSSVGLYALYRQKKEKP

3D structure

PDB

8ova A single pseudouridine on rRNA regulates ribosome structure and function in the mammalian parasite Trypanosoma brucei.

Chain

Resolution

2.47 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AS	T2 K3 T4 N5 G6 H8 R11 K12 R15 R17 R18 N20 W22 A23 K28 S44 S45 H46 K48 Q61 N63 S64 A65 R67 K68 N87 D88 G104 F105 R107 S108 G113 D114 R119 K124	T1 K2 T3 N4 G5 H7 R10 K11 R14 R16 R17 N19 W21 A22 K27 S43 S44 H45 K47 Q60 N62 S63 A64 R66 K67 N86 D87 G103 F104 R106 S107 G112 D113 R118 K123

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005730	nucleolus
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links