Structure of PDB 4v5b Chain AS

Receptor sequence

>4v5bAS (length=110) Species: 562 (Escherichia coli) [Search protein sequence]

METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKV
LESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRT
SHITVVVSDR

3D structure

PDB

4v5b A Peptide Deformylase-Ribosome Complex Reveals Mechanism of Nascent Chain Processing.

Chain

Resolution

3.74 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AS	M1 K6 H7 R8 H9 R11 Q15 K16 R18 R25 K41 K42 K49 E52 S53 A56 N57 H60 N61 F75 D77 E78 P80 M82 R84 R88 A89 K90 G91 R92 R95 I96 L97 K98 R99 H102	M1 K6 H7 R8 H9 R11 Q15 K16 R18 R25 K41 K42 K49 E52 S53 A56 N57 H60 N61 F75 D77 E78 P80 M82 R84 R88 A89 K90 G91 R92 R95 I96 L97 K98 R99 H102

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding
GO:0070180	large ribosomal subunit rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0042255	ribosome assembly
GO:0042256	cytosolic ribosome assembly
GO:0046677	response to antibiotic
GO:1902626	assembly of large subunit precursor of preribosome

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v5b, PDBe:4v5b, PDBj:4v5b
PDBsum	4v5b
PubMed	18288106
UniProt	P61175\|RL22_ECOLI Large ribosomal subunit protein uL22 (Gene Name=rplV)