Structure of PDB 4v6o Chain AR

Receptor sequence

>4v6oAR (length=88) Species: 562 (Escherichia coli)

SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHH
SRRGLLRMVSQRRKLLDYLKRKDVARYTRLIERLGLRR

3D structure

• PDB: 4v6o Structural characterization of mRNA-tRNA translocation intermediates.
• Chain: AR
• Resolution: 14.7 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AR	S1 L2 T4 T7 D20 T21 G22 S23 Q27 H37 L38 H41 E44 H45 K46 K47 D48 H49 H50 R53 G54 L56 R57 S60 Q61 K64 Y68	S1 L2 T4 T7 D20 T21 G22 S23 Q27 H37 L38 H41 E44 H45 K46 K47 D48 H49 H50 R53 G54 L56 R57 S60 Q61 K64 Y68
BS02	rna	AR	L38 Q39 F42 K46 R52 L55 R63 R88	L38 Q39 F42 K46 R52 L55 R63 R88

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022627 cytosolic small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v6o, PDBe:4v6o, PDBj:4v6o
• PDBsum: 4v6o
• PubMed: 22467828
• UniProt: Q8X9M2|RS15_ECO57 Small ribosomal subunit protein uS15 (Gene Name=rpsO)