Structure of PDB 4v6s Chain AP

Receptor sequence

>4v6sAP (length=127) Species: 562 (Escherichia coli)

MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEP
LITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKC
GFRAGDNAPMAYIELVDRSEKAEAAAE

3D structure

• PDB: 4v6s Structural characterization of mRNA-tRNA translocation intermediates.
• Chain: AP
• Resolution: 13.1 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AP	M1 R2 H3 R4 K5 S6 G7 R8 Q9 L10 N11 R12 N13 S14 S15 H16 R17 R22 N23 R30 H31 K35 T37 L38 P39 K40 K42 E43 R45 R46 E49 T53 V60 A61 N62 R63 R64 A68 R69 R71 D72 R90 G92 G93 Y94 R96 L98 K99 F102 R103 G105 D106 N107	M1 R2 H3 R4 K5 S6 G7 R8 Q9 L10 N11 R12 N13 S14 S15 H16 R17 R22 N23 R30 H31 K35 T37 L38 P39 K40 K42 E43 R45 R46 E49 T53 V60 A61 N62 R63 R64 A68 R69 R71 D72 R90 G92 G93 Y94 R96 L98 K99 F102 R103 G105 D106 N107

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0005515 protein binding

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v6s, PDBe:4v6s, PDBj:4v6s
• PDBsum: 4v6s
• PubMed: 22467828
• UniProt: P0AG44|RL17_ECOLI Large ribosomal subunit protein bL17 (Gene Name=rplQ)