Structure of PDB 4v6d Chain AP

Receptor sequence
>4v6dAP (length=82) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGT
RLDLDRIAHWVGQGATISDRVAALIKEVNKAA
3D structure
PDB4v6d Structures of the ribosome in intermediate States of ratcheting.
ChainAP
Resolution3.814 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna AP M1 V2 R5 L6 R8 H9 G10 K12 K13 R14 F16 Y17 R25 A27 R28 G30 R31 W60 Q63 G64 S68 R70 M1 V2 R5 L6 R8 H9 G10 K12 K13 R14 F16 Y17 R25 A27 R28 G30 R31 W60 Q63 G64 S68 R70
Gene Ontology
Molecular Function
GO:0000400 four-way junction DNA binding
GO:0003735 structural constituent of ribosome
GO:0004519 endonuclease activity
GO:0004520 DNA endonuclease activity
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0002181 cytoplasmic translation
GO:0006259 DNA metabolic process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:4v6d, PDBe:4v6d, PDBj:4v6d
PDBsum4v6d
PubMed19696352
UniProtP0A7T3|RS16_ECOLI Small ribosomal subunit protein bS16 (Gene Name=rpsP)

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