Structure of PDB 8apo Chain AN

Receptor sequence

>8apoAN (length=420) Species: 353565 (Polytomella magna) [Search protein sequence]

GTIFNTGVPGPRPEVAQKLSTEYQGHILRMISLAESASELDEVLWSSKKH
LRPVHIARSCLKLEYLRTKEKGREVSEPIKNLASELENYVELYSTKFTIG
QVSQLVRGLSSIRRNIQPDLLLKLAAVVVADDGRQVQLANEMDCRDLFFG
FFSQGFDNELFWKRLSESVLPRLPYFNADVVSTVLRVVSGLRFLHNTEFA
HATMTALVPKVGDLSPARLADAFFSASLLDPTDVSGLNAKLEERFLREFT
SFPIKDTVTMFQTVTVRRHSTPELAAQVAPLVAAQAHQLPVRHLRRALEG
MVTAGWKDTAEIPLYAILAKQAARLVLGKQSAATSAILGKHVDNQGYQRT
PVQLLRQLARIFANTGLKAGPGANQPLAPYFAALQRELEGRLAELDEQVT
DDFAESFKKVGIAEGARVQI

3D structure

PDB

8apo Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites

Chain

Resolution

3.2 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AN	K18 Q24 G25 I27 L28 R29 H50 R52 H55 E64 Y65 R107 S111 R113 M142 D143 F149 S153 R186 R218 F224 S225 Q262 T263 V266 Q357	K18 Q24 G25 I27 L28 R29 H50 R52 H55 E64 Y65 R107 S111 R113 M142 D143 F149 S153 R186 R218 F224 S225 Q262 T263 V266 Q357
BS02	rna	AN	G1 G10	G1 G10

External links

PDB	RCSB:8apo, PDBe:8apo, PDBj:8apo
PDBsum	8apo
PubMed	36253367

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