Structure of PDB 8apn Chain AM

Receptor sequence

>8apnAM (length=419) Species: 353565 (Polytomella magna) [Search protein sequence]

TIFNTGVPGPRPEVAQKLSTEYQGHILRMISLAESASELDEVLWSSKKHL
RPVHIARSCLKLEYLRTKEKGREVSEPIKNLASELENYVELYSTKFTIGQ
VSQLVRGLSSIRRNIQPDLLLKLAAVVVADDGRQVQLANEMDCRDLFFGF
FSQGFDNELFWKRLSESVLPRLPYFNADVVSTVLRVVSGLRFLHNTEFAH
ATMTALVPKVGDLSPARLADAFFSASLLDPTDVSGLNAKLEERFLREFTS
FPIKDTVTMFQTVTVRRHSTPELAAQVAPLVAAQAHQLPVRHLRRALEGM
VTAGWKDTAEIPLYAILAKQAARLVLGKQSAATSAILGKHVDNQGYQRTP
VQLLRQLARIFANTGLKAGPGANQPLAPYFAALQRELEGRLAELDEQVTD
DFAESFKKVGIAEGARVQI

3D structure

PDB

8apn Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.

Chain

Resolution

3.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	AM	T4 G5 V6 R10 E12 V13	T5 G6 V7 R11 E13 V14
BS02	rna	AM	R56 E62 Y63 Q102 R105 R111 M140 D141 F147 S151 T181 R184 S187 R216 F222 Q260 T261 V264 R266 R293 E297 Q351	R57 E63 Y64 Q103 R106 R112 M141 D142 F148 S152 T182 R185 S188 R217 F223 Q261 T262 V265 R267 R294 E298 Q352
BS03	rna	AM	T19 E20	T20 E21
BS04	rna	AM	T0 I1	T1 I2

External links

PDB	RCSB:8apn, PDBe:8apn, PDBj:8apn
PDBsum	8apn
PubMed	36253367

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