Structure of PDB 9bdn Chain AL32

Receptor sequence

>9bdnAL32 (length=128) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

AALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKG
QILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAH
NVSSKNRKAIVERAAQLAIRVTNPNARL

3D structure

PDB

9bdn Structural mechanism of angiogenin activation by the ribosome.

Chain

Resolution

3.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AL32	R5 K14 K15 R16 T17 K18 K19 F20 R22 H23 Q24 D26 R27 Y28 V29 K30 I31 N34 W35 R36 K37 R39 G40 I41 D42 N43 R44 R46 R47 R48 K50 G51 Q52 N57 I58 G59 Y60 G61 S62 N63 K64 K65 K67 H68 L78 N81 E98 H101 N102 S104 S105 K106 N107 R108 N124 N126 R128	R4 K13 K14 R15 T16 K17 K18 F19 R21 H22 Q23 D25 R26 Y27 V28 K29 I30 N33 W34 R35 K36 R38 G39 I40 D41 N42 R43 R45 R46 R47 K49 G50 Q51 N56 I57 G58 Y59 G60 S61 N62 K63 K64 K66 H67 L77 N80 E97 H100 N101 S103 S104 K105 N106 R107 N123 N125 R127

Gene Ontology

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Cellular Component

External links

PDB	RCSB:9bdn, PDBe:9bdn, PDBj:9bdn
PDBsum	9bdn
PubMed	38718836
UniProt	G1TUN8\|RL32_RABIT Large ribosomal subunit protein eL32 (Gene Name=RPL32)

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