Structure of PDB 9bdn Chain AL25

Receptor sequence

>9bdnAL25 (length=118) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

KIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMK
KIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYV
RLAPDYDALDVANKIGII

3D structure

PDB

9bdn Structural mechanism of angiogenin activation by the ribosome.

Chain

AL25

Resolution

3.1 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AL25	T45 R47 R48 K50 T51 R53 R56 Q57 P58 K59 Y60 T83 K89 N105 K106 H107 K123 N125 T126 L127 I128 P130 K134 K135 Y137 R139	T7 R9 R10 K12 T13 R15 R18 Q19 P20 K21 Y22 T45 K51 N67 K68 H69 K85 N87 T88 L89 I90 P92 K96 K97 Y99 R101
BS02	rna	AL25	T51 L52 R56 K63 R67 R68 K70 N105 H107 Q108	T13 L14 R18 K25 R29 R30 K32 N67 H69 Q70

External links

PDB	RCSB:9bdn, PDBe:9bdn, PDBj:9bdn
PDBsum	9bdn
PubMed	38718836
UniProt	G1SE76\|RL23A_RABIT Large ribosomal subunit protein uL23 (Gene Name=RPL23A)