Structure of PDB 9bdn Chain AL20

Receptor sequence

>9bdnAL20 (length=176) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

MKASGTLREYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQ
LKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDL
TTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKI
KFPLPHRVLRRQHKPRFTTKRPNTFF

3D structure

PDB

9bdn Structural mechanism of angiogenin activation by the ribosome.

Chain

AL20

Resolution

3.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AL20	K2 A3 S4 R8 Y63 Q66 V67 F68 K70 P72 R87 S88 M93 Y94 R95 R98 R111 G114 A115 R116 H117 R118 R120 A134 R139 H146 D147 S148 H156 R157 R160 R161 H163 P165 R166 T169 K170 R171 P172 N173 T174 F175 F176	K2 A3 S4 R8 Y63 Q66 V67 F68 K70 P72 R87 S88 M93 Y94 R95 R98 R111 G114 A115 R116 H117 R118 R120 A134 R139 H146 D147 S148 H156 R157 R160 R161 H163 P165 R166 T169 K170 R171 P172 N173 T174 F175 F176
BS02	rna	AL20	S42 R43 Y46 S49 K53 K55 K56 S57 R87 R120 H122	S42 R43 Y46 S49 K53 K55 K56 S57 R87 R120 H122

External links

PDB	RCSB:9bdn, PDBe:9bdn, PDBj:9bdn
PDBsum	9bdn
PubMed	38718836
UniProt	G1TTY7\|RL18A_RABIT Large ribosomal subunit protein eL20 (Gene Name=RPL18A)

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