Structure of PDB 9bdl Chain AL17

Receptor sequence

>9bdlAL17 (length=153) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDV
TLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESN
AELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT
EKE

3D structure

PDB

9bdl Structural mechanism of angiogenin activation by the ribosome.

Chain

AL17

Resolution

2.8 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AL17	R3 Y4 S17 R18 S20 R23 H25 K27 N28 R30 Q34 K37 K54 K55 R62 Y63 G65 G66 G68 R69 A71 Q72 K74 Q75 T79 Q80 R82 W83 P84 K85 K86 N97 S100 N101 Q118 V119 R127 T129 Y130 R131 A132 H133 G134 R135 I136 N137 P138 Y139 M140 S141	R2 Y3 S16 R17 S19 R22 H24 K26 N27 R29 Q33 K36 K53 K54 R61 Y62 G64 G65 G67 R68 A70 Q71 K73 Q74 T78 Q79 R81 W82 P83 K84 K85 N96 S99 N100 Q117 V118 R126 T128 Y129 R130 A131 H132 G133 R134 I135 N136 P137 Y138 M139 S140
BS02	rna	AL17	R3 S5 R61 R62 W78 N120 K121 P123 H145	R2 S4 R60 R61 W77 N119 K120 P122 H144

External links

PDB	RCSB:9bdl, PDBe:9bdl, PDBj:9bdl
PDBsum	9bdl
PubMed	38718836
UniProt	G1SCJ6\|RL17_RABIT Large ribosomal subunit protein uL22 (Gene Name=RPL17)

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