Structure of PDB 9bdp Chain AL08

Receptor sequence

>9bdpAL08 (length=233) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

VVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKV
PPAINQFTQVLDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAKRP
PVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCI
LKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEI
RRHWGGNVLGPKSVARIAKLEKAKAKELATKLG

3D structure

PDB

9bdp Structural mechanism of angiogenin activation by the ribosome.

Chain

AL08

Resolution

3.7 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AL08	K87 R88 P89 K90 I94 Q96 I98 Q99 R102 L104 R106 F107 K109 P111 R112 Y113 R115 I122 R126 L127 E158 Q161 K163 Q165 R166 R185 A191 G192 N194 T195 V214 P216 K240 A241 R249 K250 C252 T253 P297 K298 S299 R302 K305	K8 R9 P10 K11 I15 Q17 I19 Q20 R23 L25 R27 F28 K30 P32 R33 Y34 R36 I43 R47 L48 E79 Q82 K84 Q86 R87 R99 A105 G106 N108 T109 V128 P130 K154 A155 R163 K164 C166 T167 P211 K212 S213 R216 K219
BS02	rna	AL08	Y113 I114 Q117 R118 R142 D213 K238	Y34 I35 Q38 R39 R63 D127 K152

External links

PDB	RCSB:9bdp, PDBe:9bdp, PDBj:9bdp
PDBsum	9bdp
PubMed	38718836
UniProt	G1STW0\|RL7A_RABIT Large ribosomal subunit protein eL8 (Gene Name=RPL7A)

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