Structure of PDB 6n1d Chain AL01

Receptor sequence
>6n1dAL01 (length=228) Species: 274 (Thermus thermophilus) [Search protein sequence]
PKHGKRYRALLEKVDPNKVYTIDEAARLVKELATAKFDETVEVHAKLGID
PRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEII
QKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIG
EIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHK
PEGAKGTFLRSVYVTTTMGPSVRINPHS
3D structure
PDB6n1d Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.
ChainAL01
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna AL01 P2 K3 K6 R7 Y8 A36 K37 E43 H45 K47 R135 T169 H173 T208 S212 Y214 T216 T218 M219 S222 R224 P1 K2 K5 R6 Y7 A35 K36 E42 H44 K46 R134 T168 H172 T207 S211 Y213 T215 T217 M218 S221 R223
BS02 rna AL01 R53 R130 R52 R129
BS03 MG AL01 P66 N189 A192 P65 N188 A191
BS04 MG AL01 V73 I157 V72 I156
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
GO:0006417 regulation of translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6n1d, PDBe:6n1d, PDBj:6n1d
PDBsum6n1d
PubMed30936299
UniProtQ72GV9|RL1_THET2 Large ribosomal subunit protein uL1 (Gene Name=rplA)

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