Structure of PDB 9cai Chain AL

Receptor sequence

>9caiAL (length=143) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

SEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGT
YIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEK
RHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKVNK

3D structure

PDB

9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.59 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AL	E6 A8 L10 P13 T14 N16 N19 Y33 R35 E36 V37 L39 K55 K56 P64 I65 R66 M68 K76 K78 M79 T80 Y89 H91 K94 K95 R97 K101 R102 H103 K104 N105 E127 R129 P130 S132 K133 T134 R136 F137	E5 A7 L9 P12 T13 N15 N18 Y32 R34 E35 V36 L38 K54 K55 P63 I64 R65 M67 K75 K77 M78 T79 Y88 H90 K93 K94 R96 K100 R101 H102 K103 N104 E126 R128 P129 S131 K132 T133 R135 F136

External links