Structure of PDB 8apn Chain AL

Receptor sequence

>8apnAL (length=394) Species: 353565 (Polytomella magna) [Search protein sequence]

NTGVPGPRPEVAQKLSTEYQGHILRMISLAESASELDEVLWSSKKHLRPV
HIARSCLKLEYLRTKEKGREVSEPIKNLASELENYVELYSTKFTIGQVSQ
LVRGLSSIRRNIQPDLLLKLAAVVVADDGRQVQLANEMDCRDLFFGFFSQ
GFDNELFWKRLSESVLPRLPYFNADVVSTVLRVVSGLRFLHNTEFAHATM
TALVPKVGDLSPARLADAFFSASLLDPTDVSGLNAKLEERFLREFTSFPI
KDTVTMFQTVTVRRHSTPELAAQVAPLVAAQAHQLPVRHLRRALEGMVTA
GWKDTAEIPLYAILAKQAARLVLTPVQLLRQLARIFANTGLKAGPGANQP
LAPYFAALQRELEGRLAELDEQVTDDFAESFKKVGIAEGARVQI

3D structure

PDB

8apn Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.

Chain

Resolution

3.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AL	S97 T98 E99 Y100 H103 L105 R106 K126 R135 E141 Y142 R184 M219 D220 R222 F226 T260 R263 S266 R295 F301 S302 L305 Q339 T340 V343 R369	S16 T17 E18 Y19 H22 L24 R25 K45 R54 E60 Y61 R103 M138 D139 R141 F145 T179 R182 S185 R214 F220 S221 L224 Q258 T259 V262 R288

External links

PDB	RCSB:8apn, PDBe:8apn, PDBj:8apn
PDBsum	8apn
PubMed	36253367

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