Structure of PDB 8jdj Chain AK

Receptor sequence

>8jdjAK (length=123) Species: 9606 (Homo sapiens) [Search protein sequence]

TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPD
VIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTS
RKQRKERKNRMKKVRGTAKANVG

3D structure

PDB

8jdj Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.

Chain

Resolution

2.5 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AK	R8 T9 R10 K11 F12 T14 K32 A33 T34 V35 P36 K37 Y48 K49 G59 F60 R61 T62 H63 F64 G65 H89 R93 S103 R104 R107 K108 E109 K111 N112 K115 K116 R118 G119 T120	R5 T6 R7 K8 F9 T11 K29 A30 T31 V32 P33 K34 Y45 K46 G56 F57 R58 T59 H60 F61 G62 H86 R90 S100 R101 R104 K105 E106 K108 N109 K112 K113 R115 G116 T117

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0031369	translation initiation factor binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006364	rRNA processing
GO:0006412	translation
GO:0034101	erythrocyte homeostasis
GO:0042274	ribosomal small subunit biogenesis

	Cellular Component
GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0016020	membrane
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:0032040	small-subunit processome
GO:0044391	ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:8jdj, PDBe:8jdj, PDBj:8jdj
PDBsum	8jdj
PubMed	37992713
UniProt	P62847\|RS24_HUMAN Small ribosomal subunit protein eS24 (Gene Name=RPS24)