Structure of PDB 1vy5 Chain AK

Receptor sequence
>1vy5AK (length=114) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
QVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQ
LAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDT
PVPHNGCRPKKKFR
3D structure
PDB1vy5 A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
ChainAK
Resolution2.55 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna AK Y20 N26 N27 T31 G37 N38 P39 W42 S44 G46 G52 S53 K55 R85 P115 H116 N117 G118 C119 R120 K122 K123 Y8 N14 N15 T19 G25 N26 P27 W30 S32 G34 G40 S41 K43 R73 P103 H104 N105 G106 C107 R108 K110 K111
BS02 MG AK N26 G52 K55 N14 G40 K43
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1vy5, PDBe:1vy5, PDBj:1vy5
PDBsum1vy5
PubMed25132179
UniProtP80376|RS11_THET8 Small ribosomal subunit protein uS11 (Gene Name=rpsK)

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