Structure of PDB 6q8y Chain AJ

Receptor sequence

>6q8yAJ (length=193) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

AISKNLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL
DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRR
QNRNQEIFDANVQRLKEYQSKIIVFPRNGKAPEAEQVLSAAATFPIAQPA
TDVEARAVQDNGESAFRTLRLARSEKKFRGIREKRAREKAEAE

3D structure

PDB

6q8y Structure of the 80S ribosome-Xrn1 nuclease complex.

Chain

Resolution

3.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AJ	I3 K5 L10 K11 N12 H13 F14 R15 K16 H17 W18 Q19 Q28 A29 K31 K32 R35 R36 R39 R42 R55 V58 R59 A60 P61 T62 Y65 N66 K68 R70 G72 R73 R91 D98 H99 R100 R101 R104 F167 R171 R174 S175 K177 K178 F179 K185 R186	I2 K4 L9 K10 N11 H12 F13 R14 K15 H16 W17 Q18 Q27 A28 K30 K31 R34 R35 R38 R41 R54 V57 R58 A59 P60 T61 Y64 N65 K67 R69 G71 R72 R90 D97 H98 R99 R100 R103 F166 R170 R173 S174 K176 K177 F178 K184 R185
BS02	rna	AJ	F26 S34	F25 S33

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6q8y, PDBe:6q8y, PDBj:6q8y
PDBsum	6q8y
PubMed	30911188
UniProt	Q12690\|RL13A_YEAST Large ribosomal subunit protein eL13A (Gene Name=RPL13A)

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