Structure of PDB 6gz3 Chain AJ

Receptor sequence

>6gz3AJ (length=169) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR
SFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFG
IQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRIS
KEEAMRWFQQKYDGIILPG

3D structure

PDB

6gz3 tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis.

Chain

Resolution

3.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AJ	K19 C21 N23 C25 S51 K52 Y55 F60 A69 N97 N98 S100 D101 T102 N104 G106 F107 Q110 G127 D129 Y131 K145	K11 C13 N15 C17 S43 K44 Y47 F52 A61 N89 N90 S92 D93 T94 N96 G98 F99 Q102 G119 D121 Y123 K137
BS02	rna	AJ	M12 Q46 T47 V49 T73 R75 P137 G138 S140 I141 K144 K145 R146 R147 C150 I151 A153 K154	M4 Q38 T39 V41 T65 R67 P129 G130 S132 I133 K136 K137 R138 R139 C142 I143 A145 K146

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6gz3, PDBe:6gz3, PDBj:6gz3
PDBsum	6gz3
PubMed	30517857
UniProt	G1TUB8\|RL11_RABIT Large ribosomal subunit protein uL5 (Gene Name=RPL11)

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