Structure of PDB 9cai Chain AG

Receptor sequence

>9caiAG (length=228) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVV
RIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGC
IVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKH
DDVTKYVITHDKTFPDGVTKTIAPKIQRLITPARIARKKYLLRQKRNQKI
KMRDDAAAYHKLLAKYSKEEHDAKIARR

3D structure

PDB

9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.

Chain

Resolution

2.59 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	AG	R2 N4 Q13 S15 R31 K58 Q59 G60 F61 Q65 I67 R72 L75 S82 C83 Y84 R85 R87 K88 G90 E91 R92 K93 R94 S96 S107 A108 S110 R131 K132 L133 G134 P135 K136 R137 K140 H160 P174 K175 Q177 R178 I180 A183 R184 A186 R187 Y190 R193 M202	R2 N4 Q13 S15 R31 K58 Q59 G60 F61 Q65 I67 R72 L75 S82 C83 Y84 R85 R87 K88 G90 E91 R92 K93 R94 S96 S107 A108 S110 R131 K132 L133 G134 P135 K136 R137 K140 H160 P174 K175 Q177 R178 I180 A183 R184 A186 R187 Y190 R193 M202

External links

PDB	RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum	9cai
PubMed	39209556
UniProt	Q9NEN6\|RS6_CAEEL Small ribosomal subunit protein eS6 (Gene Name=rps-6)

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